Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs455386 chr3:161102495 A/T 4.04E-6 496 24 25.72 17.37 KM Plot
HNSC rs459697 chr3:161093420 G/A 9.9E-6 496 23.37 24.17 17.4 KM Plot
HNSC rs4597724 chr3:160963110 A/G 4.96E-5 515 24 24.07 17.75 KM Plot
HNSC rs460508 chr3:161091089 C/G 1.57E-5 515 17.4 24.2 23.27 KM Plot
HNSC rs4616313 chr17:64283515 A/T 1.65E-5 514 21.42 22.92 15.95 KM Plot
HNSC rs461638 chr3:161103166 A/G 3.98E-6 500 24 25.4 17.35 KM Plot
HNSC rs462413 chr3:161101587 T/C 1.28E-6 494 23.37 26.35 17.37 KM Plot
HNSC rs4659417 chr1:26583998 T/C 1.75E-5 515 6.8 20.58 22.1 KM Plot
HNSC rs4659424 chr1:26622993 C/T 5.66E-6 513 22.02 20.72 7.23 KM Plot
HNSC rs4659425 chr1:26626728 C/T 5.12E-6 514 7.23 21.37 22.02 KM Plot
HNSC rs466626 chr3:161103629 A/C 4.64E-5 502 24.63 25.13 17.35 KM Plot
HNSC rs4768412 chr12:42869140 C/T 2.74E-5 508 22.1 22.73 17.52 KM Plot
HNSC rs4776063 chr15:52904046 C/A 3.04E-6 512 12.57 20.77 23.73 KM Plot
HNSC rs4851191 chr2:99827098 A/G 4.15E-8 514 6.83 19.27 22.27 KM Plot
HNSC rs4851194 chr2:99838203 A/C 3.03E-8 510 6.65 19.72 22.27 KM Plot